Simulation Interactions Diagram - P-RMSF (Part 3/8) Published 2013-08-06 Download video MP4 360p Download video MP4 720p Recommendations 12:54 Desmond - Analyzing MD Trajectories with the Simulation Interactions Diagram (Part 4) 08:00 RMSF analysis of trajectory (DCD file) using VMD 01:46 Simulation Interactions Diagram - PL-RMSD (Part 2/8) 09:13 RMSD analysis of a complex of ligand and receptor with Gromacs 31:24 Molecular Dynamics Trajectory Analysis using VMD 24:27 EP 12 | Post MD simulation assessment of Protein Ligand Complex in Gromacs | RMSD, RMSF, H-bonds, Rg 24:29 Molecular dynamic simulation for protein & ligand-protein complex: web tool free easy, only click 1:02:01 Molecular modelling for the medicinal chemistry toolkit 00:56 Why we need MD Simulation of proteins | Molecular Dynamics Simulations 19:26 Pairwise RMSD analysis of a trajectory by using MDanalysis (Python) 3:16:41 Webinar Demonstration - Molecular Dynamics Simulation of Protein-Ligand using Gromacs 1:40:20 18 Demo MD Simulation SID analysis 00:50 Simulation Interactions Diagram - Generate Report (Part 8/8) 29:01 Molecular Visualization Using PyMOL: 1 Introduction/User Interface | Brown Lab 09:33 3. Molecular Dynamic Simulation Result Analysis on Desmond by Simulation Interaction Diagram (SID) 06:06 How to calculate solvent accessible surface area (SASA) of a protein in VMD? 23:40 Molecular Dynamics Simulation | Gromacs Installation (Win&Linux)| BeginnerTutorial | Bioinformatics 18:24 Analysis of Molecular Dynamics Simulation Trajectory using VMD plugins without any codes 10:00 Movie Making from molecular dynamics simulation with VMD 08:14 PYMOL II Pymol align two structures II Pymol alignment II xgene and proteinx Similar videos 00:52 Simulation Interactions Diagram - L-RMSF (Part 4/8) 01:55 Simulation Interactions Diagram - Loading Data (Part 1/8) 03:19 Simulation Interactions Diagram - PL-Contacts (Part 5/8) 01:37 Simulation Interactions Diagram - L-Torsions (Part 7/8) 58:28 Molecular Dynamic Simulation Process: Part III 00:58 Simulation Interactions Diagram - LP-Contacts (Part 6/8) 05:59 MDtraj Tutorials- (5)- RMSF analysis of protein MD trajectory 19:30 YASARA: Chaper 3 [Making Graphs] 40:58 Lecture 48: MD simulations - analysis of simulation trajectories (continued), case studies I 01:35 gmx_MMPBSA_ana: Per-residue decomposition analysis 14:28 VMD data analysis automatization (part2): RMSF and Salt bridges analysis of trajectory 03:43 A quick analysis of #SASA with #Gromacs: Commands and a brief interpretation 17:08 The Machinery Underlying a Molecular Dynamics Simulation 07:57 Lecture 11, concept 17: Protein structure RMSD vs. sequence identity More results