MDtraj Tutorials- (5)- RMSF analysis of protein MD trajectory Published 2021-03-07 Download video MP4 360p Download video MP4 720p Recommendations 31:24 Molecular Dynamics Trajectory Analysis using VMD 07:12 MDtraj Tutorials- (1) Introduction and Installation with Conda 19:26 Pairwise RMSD analysis of a trajectory by using MDanalysis (Python) 24:27 EP 12 | Post MD simulation assessment of Protein Ligand Complex in Gromacs | RMSD, RMSF, H-bonds, Rg 01:48 Calculation of RMSD of redocked native ligand by MOE | Nazir Ahmad 09:26 MDtraj Tutorials- (4)- RMSD analysis of protein MD trajectory 25:54 xmgrace 3:16:41 Webinar Demonstration - Molecular Dynamics Simulation of Protein-Ligand using Gromacs 14:28 VMD data analysis automatization (part2): RMSF and Salt bridges analysis of trajectory 3:57:55 Learn TensorFlow and Deep Learning fundamentals with Python (code-first introduction) Part 2/2 1:07:56 BioExcel Webinar #58: CHARMM Force Field Development History, Features and Implementation in GROMACS 53:51 Molecular Dynamics Simulation of Protein in Water | GROMACS TUTORIAL | CHARMM forcefield #gromacs 1:40:20 18 Demo MD Simulation SID analysis 12:44 VMD data analysis automatization (Part3): SASA and H-bonding analysis of trajectory 10:00 Movie Making from molecular dynamics simulation with VMD 1:17:43 EP 10 | Protein-Ligand MD Simulation in Gromacs-A to Z | all reusable commands and files provided 58:28 Molecular Dynamic Simulation Process: Part III 10:20 MDtraj Tutorials- (2) Load, slice, align,combine,and save MDs trajectories 05:31 VMD Image making tutorial 08:29 RMSD (Root Mean Square Deviation) Calculation by Discovery Studio Visualizer @MajidAli2020 Similar videos 05:47 Setting up MD trajectories 00:52 Simulation Interactions Diagram - L-RMSF (Part 4/8) 24:51 Exercise: Performing Analysis with MDTraj 01:20 Simulation Interactions Diagram - P-RMSF (Part 3/8) 14:19 RMSF - Video Analysis 09:16 MDtraj Tutorials- (3) atom selection language 09:33 3. Molecular Dynamic Simulation Result Analysis on Desmond by Simulation Interaction Diagram (SID) 01:35 gmx_MMPBSA_ana: Per-residue decomposition analysis 04:56 Calculating RMSD for whole protein using text command 27:00 GMT20221102 cpptrajInteract 3840x2160 01:46 [OUTDATED] Simulation Interactions Diagram - PL-RMSD (Part 2/8) 23:17 CC_news 013 Comparism of mdtraj, mdanalysis and pytraj EN 00:05 Processed gromacs trajectory -fit rot+transxy 09:25 MDAnalysis tutorial: Extract/Save atomic information as data arrays from/to PDB files (B_factors) More results