A quick analysis of #SASA with #Gromacs: Commands and a brief interpretation Published 2022-07-05 Download video MP4 360p Recommendations 03:49 HOW to extract protein structure (frames) of a #GROMACS MD simulation using #VMD 1:17:43 EP 10 | Protein-Ligand MD Simulation in Gromacs-A to Z | all reusable commands and files provided 50:13 MMPBSA analysis of protein ligand using gmx_mmpbsa for gromacs trajectories 59:04 Automating the GROMACS analysis tools on HPC systems 04:32 Molecular dynamic simulation | Principal component Analysis (PCA) with Gromacs Command line 08:38 Estimating Solvent Accessible Surface Area of a Protein 25:03 Molecular Dynamics Tutorial | Protein-Ligand Complex: GROMACS - PART 1 3:29:32 🔴 Let’s build a WEB SCRAPER with React! (Next.js 13.2, Firebase, Webhooks, TypeScript, Bright Data) 07:05 Molecular Docking and Virtual Screening with Vina by Galaxy Europe server 31:24 Molecular Dynamics Trajectory Analysis using VMD 12:44 VMD data analysis automatization (Part3): SASA and H-bonding analysis of trajectory 1:44:23 Protein Ligand MD simulation Gromacs 3:49:50 Build a Realtime Chat App in React Native (tutorial for beginners) 🔴 20:21 Tutorial for Performing MM/GBSA and MM/PBSA free energy calculations from MD simulations with amber 1:40:20 18 Demo MD Simulation SID analysis 06:06 How to calculate solvent accessible surface area (SASA) of a protein in VMD? 23:40 Molecular Dynamics Simulation | Gromacs Installation (Win&Linux)| BeginnerTutorial | Bioinformatics 12:54 [OUTDATED] Desmond - Analyzing MD Trajectories with the Simulation Interactions Diagram (Part 4) 24:27 EP 12 | Post MD simulation assessment of Protein Ligand Complex in Gromacs | RMSD, RMSF, H-bonds, Rg 01:20 gmx_MMPBSA_ana: GB and Iteraction Entropy calculations Similar videos 04:59 Gromacs Hbond analysis | How to use VMD to analysis HB? 09:13 RMSD analysis of a complex of ligand and receptor with Gromacs 12:02 Simulation of a Water Box with #GROMACS | Part-3 Analysis of the trajectory 08:48 HeroMDAnalysis - A quick guide to an automagical tool for GROMACS based MD simulation analysis 31:52 Decoding Molecular Dynamic Simulation steps - What do the GROMACS Tool Commands mean? 2:20:52 Unlock the Secrets of MD Simulations Using Gromacs: From Theory to Application (Webnair) 31:17 MD-Analysis 24:29 Molecular dynamic simulation for protein & ligand-protein complex: web tool free easy, only click 14:19 RMSF - Video Analysis 58:28 Molecular Dynamic Simulation Process: Part III 01:20 Simulation Interactions Diagram - P-RMSF (Part 3/8) 05:32 Solvent Accessible Surface - Different Definitions 52:21 g mmpbsa installation 01:43 gmx_MMPBSA_ana: Correlation analysis 01:07 Voroprot - working with solvent accessible surface 03:19 Simulation Interactions Diagram - PL-Contacts (Part 5/8) More results