MMPBSA analysis of protein ligand using gmx_mmpbsa for gromacs trajectories Published 2022-04-20 Download video MP4 360p Download video MP4 720p Recommendations 30:44 Gromacs installation older version 52:21 g mmpbsa installation 3:16:41 Webinar Demonstration - Molecular Dynamics Simulation of Protein-Ligand using Gromacs 35:00 g_mmpbsa running and analysis 2:12:35 Molecular Docking with all new AutoDock Vina 1.2 | New era of docking 24:27 EP 12 | Post MD simulation assessment of Protein Ligand Complex in Gromacs | RMSD, RMSF, H-bonds, Rg 09:02 Using VMD for analyze NAMD Log Files, Hydrogen Bond and RMSD Calculations 1:07:48 Basics of docking and introduction to HADDOCK 1:48:25 Molecular Dynamics simulations for Biomolecules 101 | Theory and Practice 02:09 Installing gmx-MMPBSA on Windows: A Step-by-Step Guide for GROMACS Integration 48:54 Notion Databases - Full Course for Beginners 1:17:43 EP 10 | Protein-Ligand MD Simulation in Gromacs-A to Z | all reusable commands and files provided 3:29:32 🔴 Let’s build a WEB SCRAPER with React! (Next.js 13.2, Firebase, Webhooks, TypeScript, Bright Data) 1:33:28 Git for GitLab (Beginner's FULL COURSE) 11:47 An Introduction to Molecular Dynamics Simulation 57:37 GROMACS 1:18:14 Protein-ligand complex | Gromacs tutorial | CHARMM forcefield | Molecular dynamics simulation 08:00 RMSF analysis of trajectory (DCD file) using VMD 1:40:20 18 Demo MD Simulation SID analysis 1:11:48 Running molecular dynamics simulations using GROMACS Similar videos 20:21 Tutorial for Performing MM/GBSA and MM/PBSA free energy calculations from MD simulations with amber 21:14 General overview of gmx_MMPBSA suite 00:59 gmx MMPBSA ana under pressure 15:24 EP 11 | Post MD Simulation movie for visualization Protein-Ligand complex trajectories | Gromacs 01:35 gmx_MMPBSA_ana: Per-residue decomposition analysis 14:50 How to calculate Binding Affinity using MMPBSA py in Ambertools (an Easier way) 23:38 MMPBSA In Amber How to plot RMSD graph using CPPTRAJ and MMPBSA using Production run 19:31 How to use gmx_MMPBSA with GROMACS on the Super Computer 03:43 A quick analysis of #SASA with #Gromacs: Commands and a brief interpretation 04:31 Lecture 13, concept 01: Free energy calculation provides good relative binding free energies 1:44:23 Protein Ligand MD simulation Gromacs 01:20 gmx_MMPBSA_ana: GB and Iteraction Entropy calculations 01:44 gmx_MMPBSA_ana: Functionalities More results