Single-cell integration in python with scanpy Published 2022-06-05 Download video MP4 360p Download video MP4 720p Recommendations 13:00 Single-cell analysis with scVI machine-learning toolkit 24:37 Single Cell Sequencing - Eric Chow (UCSF) 16:24 Single-cell trajectory and pseudotime analysis with Monocle3 and Seurat in R 16:18 4th scanpy session - Clustering and cell type annotation 40:01 Real World Data Cleaning in Python Pandas (Step By Step) 20:09 Comparing single-cell RNA integration methods | Which is the best? 1:18:40 Complete single-cell RNAseq analysis walkthrough | Advanced introduction 08:58 Label single-cells automatically in python | scVI label transfer 13:55 Single-cell background decontamination in R and Python with SoupX 06:55 How to remove single-cell doublets in python 2:50:44 W20: Single-Cell RNA-Seq Analysis with Python - Day 1 07:43 How I would learn Machine Learning (if I could start over) 33:56 Integrate single-cell RNA-Seq datasets in R using Seurat (CCA) | Detailed Seurat Workflow Tutorial 15:59 Interactive Python Plots With IPyWidgets 17:51 Can chatGPT do single-cell bioinformatic analysis? 05:57 tSNE vs. MDS vs. PCA 25:52 Comprehensive Integration of Single Cell Data—Rahul Satija 32:14 1st scanpy session - overview and experimental considerations 37:12 Single Cell data analysis tutorial on PBMC dataset using scanpy - Part1 Similar videos 20:13 Single cell analysis in python with Scanpy 22:43 Single Cell Data Integration: Integrating Datasets Using BBKNN in Scanpy and Python 09:59 Pseudobulk single-cell analysis in Python with Scanpy and pyDeseq2 54:02 Single-cell data analysis with Scanpy and scvi-tools 11:43 Scanpy Video Tutorials--Video 1: Load the Data and Quality Control 26:59 Single Cell data analysis tutorial on PBMC dataset using scanpy - Part2 06:59 How to setup your computer for scanpy 21:21 Scanpy Video Tutorial 8: Identify Differentially Expressed Genes Across Conditions 15:42 Scanpy tutorial: Loading Single Cell RNA seq data using Scanpy and AnnData 06:06 Is Scanpy faster then Seurat? | Part 1-Data Preprocessing 11:38 Guide to filtering and subsetting single-cell anndata and pandas objects | basic and advanced 17:03 Scanpy Video Tutorial 7: Integrating Spatial Sequencing Datasets Using Scanorama More results