scRNA-seq: Remove background contamination with CellBender Published 2024-01-08 Download video MP4 360p Recommendations 07:06 scRNA-seq: Extract information from Seurat object 1:13:50 Single Cell RNA-Seq in Neuroscience 101 with Evan Macosko 15:56 scRNA-seq: Quality control and filtering cells (update, July 2023) 1:42:42 MIA: Mehrtash Babadi, Amplification artifacts in scRNA-seq; Stephen Fleming, Background removal 17:51 Can chatGPT do single-cell bioinformatic analysis? 17:32 Staying Strong: Tips to Preserve Muscle Strength with Age. 15:05 scRNA-seq: Quality control and filtering cells (update, June 2023) 33:57 New Advances in Single-Cell and Spatial Genomics (2022) 10:45 2 Filter and trim reads with DADA2 13:55 Single-cell background decontamination in R and Python with SoupX 23:26 Perturb-tracing enables scalable high-content discovery of 3D genome regulators 05:36 scRNA-seq: Normalize gene expression values with SCTransform 08:25 6 Make an ASV table and remove chimeras with DADA2 07:25 3. Combine paired reads to contigs with VSEARCH 11:19 5b. Trimming and filtering single-end reads (Ion Torrent data) 13:51 4 Sample (ASV) inference with DADA2 05:31 9 Visium data: Identifying cell types using deconvolution 07:51 8 Make a phyloseq object for ASV data in Chipster 11:07 3 Trim primers and adapters with Cutadapt 04:06 scRNA-seq: SingleR annotations Similar videos 09:17 YASCP: Next-Gen Pipeline for Ultra-Large Scale scRNA Analysis 1:19:15 Dr Nathan Tucker - "Single cell sequencing for understanding human cardiac biology" 1:02:00 H3ABioNet webinars: Genomics analysis with GATK - Eric Banks 1:07:22 Alex Shalek and Alexandra-Chloe Villani: "Leveraging Single-Cell Genomics to Understand COVID-19" More results