Locating ligand and certain amino acid residues in a complex (Gromacs:VMD) Published 2021-08-12 Download video MP4 360p Download video MP4 720p Recommendations 03:47 Make a Single pdb File out of Autodock Vina With a Copy-Past! 31:24 Molecular Dynamics Trajectory Analysis using VMD 1:17:43 EP 10 | Protein-Ligand MD Simulation in Gromacs-A to Z | all reusable commands and files provided 25:46 How to perform basic operations on a molecular structure using VMD? 24:27 EP 12 | Post MD simulation assessment of Protein Ligand Complex in Gromacs | RMSD, RMSF, H-bonds, Rg 05:37 Mutating a Residue in UCSF Chimera (Part 1) 13:35 Hydrogen bonding analysis of protein dynamics in VMD 10:00 Movie Making from molecular dynamics simulation with VMD 05:52 Installing VMD on UBUNTU [TUTORIAL] 12:50 Learn How to Make Great Publication Quality Images in Pymol in 5 Minutes! 3:16:41 Webinar Demonstration - Molecular Dynamics Simulation of Protein-Ligand using Gromacs 1:16:18 Visualizing Molecular Dynamics (VMD) 12:50 How to make water molecules look like water using VMD 05:31 VMD Image making tutorial 03:49 HOW to extract protein structure (frames) of a #GROMACS MD simulation using #VMD 03:31 RMSD analysis of trajectory (DCD file) using VMD 10:07 Analysing Protein-Ligand Interactions : Tutorial 02:25 Distance Measurements in VMD 05:41 Fixing File input/output error: 1.top in lubuntu for molecular Dynamic Simulation gromacs 100% work Similar videos 1:44:23 Protein Ligand MD simulation Gromacs 40:49 NAMD Tutorial 1 - Protein Ligand Complex MD Part 1/5 2:20:52 Unlock the Secrets of MD Simulations Using Gromacs: From Theory to Application (Webnair) 09:04 LIgand and amino acid interaction after MD simulation 09:30 Autodock result protein-ligand interaction analysis using pymol | pymol biomolecules 13:28 How to add missing amino acid residues to the protein target in docking? Answering video series #1 58:28 Molecular Dynamic Simulation Process: Part III 18:52 Lecture 51 : Analysis of the structure of protein ligand complex 18:39 How to predict protein dynamics from temperature factor using VMD 18:43 VMD Demo 31:25 M-23. Molecular Dynamics simulation II 04:59 Protein-Ligand Reading Tutorial 1: General Ligand Reading Strategy (186L, 2OI0) 53:51 Molecular Dynamics Simulation of Protein in Water | GROMACS TUTORIAL | CHARMM forcefield #gromacs 57:37 GROMACS 11:05 Molecular dynamic simulation--convergence and analysis of interaction energy by GROMACS 13:45 Molecular dynamics simulation gromacs NVT Equlibration part 7 More results